Thanks, that makes better sense now - guess I just got lost in teh many posts.
OK, the amp is generating output on both channels. The output (autoformer secondary connections are T5 and T25 for the hot lead (the black primary and white secondary are both connected here. The cold side of the outputs are the secondary black wires, connected at T10 and T30.
The hot outputs (T5 and T25) go to the headphone jack, and from there to the hot (red) speaker binding post on the top side for that channel. You may have to trace the physical wires, because the output transformer secondary winding has a fraction of an ohm resistance, making it hard to tell with a meter which speaker terminal is connected directly, and which is connected through the winding. Also, the speaker terminals in the manual are coded red for one channel, black for the other channel - but on top there's a red and a black for each channel - it's the binding post color, not the base color referred to. I'm not sure if the current speaker terminals are identical to what's in the manual now, so I can't be certain this is clear, but this seems to be the most likely place for a wiring error.
Similarly the cold outputs go to the headphone jack (lowest terminals, which are connected) and from there to the black speaker binding posts.
It might help to first unsolder the wire that goes from T5 to the headphone jack, and also the one at T25. In both cases, these are one wire of a twisted pair. Then those wires can be traced with an ohmmeter, as can the cold wires (the other wire of the twisted pairs).